AIDB Avian Influenza DataBase

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Sequence Format Conversion

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Conversion file example

  • [Phylip, Nucleotide (NT)]
    • 4 15
    • Sequence1 NT_Input ATGGAACGAA TAAAG
    • Sequence2 NT_Input ATGGAACGAA TAAA-
    • Sequence3 NT_Input ATGGAACGAA TAA--
    • Sequence4 NT_Input ATGGAACGAA T----
  • [Nexus, Nucleotide (NT)]
    • #NEXUS
    • begin data;
    • dimensions ntax=4 nchar=15;
    • format datatype=dna missing=? gap=-;
    • matrix
    • Sequence1_NT_Input ATGGAACGAATAAAG
    • Sequence2_NT_Input ATGGAACGAATAAA-
    • Sequence3_NT_Input ATGGAACGAATAA--
    • Sequence4_NT_Input ATGGAACGAAT----
    • ;
    • end;
  • [FASTA, Nucleotide (NT)]
    • > Sequence1_NT_Input
      ATGGAACGAATAAAG
    • > Sequence2_NT_Input
      ATGGAACGAATAAA-
    • > Sequence3_NT_Input
      ATGGAACGAATAA--
    • > Sequence4_NT_Input
      ATGGAACGAAT----
  • [Phylip, Amino acid (AA)]
    • 4 5
    • Sequence1_AA_Input MERIK
    • Sequence2_AA_Input MERI-
    • Sequence3_AA_Input MERI-
    • Sequence4_AA_Input MER--
  • [Nexus, Amino acid (AA)]
    • #NEXUS
    • begin data;
    • dimensions ntax=4 nchar=5;
    • format datatype=protein missing=? gap=-;
    • matrix
    • Sequence1_AA_Input MERIK
    • Sequence2_AA_Input MERI-
    • Sequence3_AA_Input MERI-
    • Sequence4_AA_Input MER--
    • ;
    • end;
  • [FASTA, Amino acid (AA)]
    • > Sequence1_AA_Input
      MERIK
    • > Sequence2_AA_Input
      MERI-
    • > Sequence3_AA_Input
      MERI-
    • > Sequence4_AA_Input
      MER--